ERX963592
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Mus musculus
ENA first public
2015-05-19
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3209396
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-05-19T13:38:52Z
INSDC last update
2018-03-08T23:12:06Z
INSDC status
public
Submitter Id
5_1_p_input-sc-2204491
common name
house mouse
sample description
ChipSeq library
sample name
5_1_p_input-sc-2204491
strain
E14

Sequenced DNA Library

library_name
12751448
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25585822
Reads aligned (%)
97.6
Duplicates removed (%)
38.5
Number of peaks
443 (qval < 1E-05)

mm9

Number of total reads
25585822
Reads aligned (%)
97.5
Duplicates removed (%)
38.7
Number of peaks
426 (qval < 1E-05)

Base call quality data from DBCLS SRA