ERX963590
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Mus musculus
ENA first public
2015-05-19
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3209394
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-05-19T13:38:52Z
INSDC last update
2018-03-08T22:41:11Z
INSDC status
public
Submitter Id
5_1-sc-2204489
common name
house mouse
sample description
ChipSeq library
sample name
5_1-sc-2204489
strain
E14

Sequenced DNA Library

library_name
12751446
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24272599
Reads aligned (%)
95.5
Duplicates removed (%)
25.9
Number of peaks
8185 (qval < 1E-05)

mm9

Number of total reads
24272599
Reads aligned (%)
94.6
Duplicates removed (%)
25.8
Number of peaks
8429 (qval < 1E-05)

Base call quality data from DBCLS SRA