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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
ERX910102
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
ES cells
ArrayExpress-Genotype
MBD3 KO
ArrayExpress-Species
mus musculus
ENA first public
2015-03-17
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3137573
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-03-17T14:55:02Z
INSDC last update
2018-03-08T22:16:03Z
INSDC status
public
Submitter Id
TQ131114_9-sc-2176511
common name
house mouse
sample description
bisulfite treated genomic DNA from mouse Mbd3KO ES cells replicate3
sample name
TQ131114_9-sc-2176511
Sequenced DNA Library
library_name
12391982
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Bisulphate qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
24586512
Reads aligned (%)
3.2
Duplicates removed (%)
7.0
Number of peaks
180 (qval < 1E-05)
mm9
Number of total reads
24586512
Reads aligned (%)
3.1
Duplicates removed (%)
5.8
Number of peaks
155 (qval < 1E-05)
Base call quality data from
DBCLS SRA