ERX910088
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
ES cells
ArrayExpress-Genotype
Sall4 KO
ArrayExpress-Species
mus musculus
ENA first public
2015-03-17
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3137568
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-03-17T14:55:02Z
INSDC last update
2018-03-08T21:50:08Z
INSDC status
public
Submitter Id
TQ131114_4-sc-2176506
common name
house mouse
sample description
bisulfite treated genomic DNA from mouse Sall4KO ES cells replicate1
sample name
TQ131114_4-sc-2176506

Sequenced DNA Library

library_name
12391977
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Bisulphate qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21092492
Reads aligned (%)
3.6
Duplicates removed (%)
8.2
Number of peaks
143 (qval < 1E-05)

mm9

Number of total reads
21092492
Reads aligned (%)
3.5
Duplicates removed (%)
7.2
Number of peaks
130 (qval < 1E-05)

Base call quality data from DBCLS SRA