ERX704048
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

ArrayExpress-CellType
HL60
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-OrganismPart
Blood
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2015-02-17
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3107869
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-02-17T09:15:12Z
INSDC last update
2018-03-08T20:42:12Z
INSDC status
public
Submitter Id
NS810-sc-2163363
common name
human
sample description
ChIP
sample name
NS810-sc-2163363

Sequenced DNA Library

library_name
12174091
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11207534
Reads aligned (%)
98.5
Duplicates removed (%)
4.8
Number of peaks
11239 (qval < 1E-05)

hg19

Number of total reads
11207534
Reads aligned (%)
97.7
Duplicates removed (%)
5.8
Number of peaks
11289 (qval < 1E-05)

Base call quality data from DBCLS SRA