ERX704043
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

ArrayExpress-CellType
U937
ArrayExpress-Immunoprecipitate
rad21
ArrayExpress-OrganismPart
Blood
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
male
ArrayExpress-Species
Homo sapiens
ENA first public
2015-02-17
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3107871
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-02-17T09:15:12Z
INSDC last update
2018-03-08T20:40:39Z
INSDC status
public
Submitter Id
NS812-sc-2163365
common name
human
sample description
ChIP
sample name
NS812-sc-2163365

Sequenced DNA Library

library_name
12174093
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9674100
Reads aligned (%)
97.4
Duplicates removed (%)
7.1
Number of peaks
377 (qval < 1E-05)

hg19

Number of total reads
9674100
Reads aligned (%)
96.4
Duplicates removed (%)
8.5
Number of peaks
625 (qval < 1E-05)

Base call quality data from DBCLS SRA