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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: HL-60
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX704040
Illumina HiSeq 2500 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
ArrayExpress-CellType
HL60
ArrayExpress-Immunoprecipitate
SA1
ArrayExpress-OrganismPart
Blood
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2015-02-17
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3107858
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-02-17T09:15:12Z
INSDC last update
2018-03-08T20:53:13Z
INSDC status
public
Submitter Id
NS603-sc-2163352
common name
human
sample description
ChIP
sample name
NS603-sc-2163352
Sequenced DNA Library
library_name
12174080
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
10132485
Reads aligned (%)
98.7
Duplicates removed (%)
4.5
Number of peaks
9046 (qval < 1E-05)
hg19
Number of total reads
10132485
Reads aligned (%)
97.7
Duplicates removed (%)
5.7
Number of peaks
9137 (qval < 1E-05)
Base call quality data from
DBCLS SRA