ERX664207
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
B-Lymphocyte
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2014-11-20
ENA last update
2018-03-08
External Id
SAMEA1946045
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-20T17:01:12Z
INSDC last update
2018-03-08T15:27:25Z
INSDC status
public
Submitter Id
GM12892_rep2-sc-2011-06-09T13:38:49Z-1162274
common name
human
sample name
GM12892_rep2-sc-2011-06-09T13:38:49Z-1162274

Sequenced DNA Library

library_name
3260872
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
55734209
Reads aligned (%)
98.0
Duplicates removed (%)
22.3
Number of peaks
16188 (qval < 1E-05)

hg19

Number of total reads
55734209
Reads aligned (%)
96.8
Duplicates removed (%)
22.8
Number of peaks
16723 (qval < 1E-05)

Base call quality data from DBCLS SRA