ERX662626
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Spleen
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2015-01-08
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2779804
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-01-08T09:44:01Z
INSDC last update
2018-03-08T21:21:31Z
INSDC status
public
Submitter Id
Stat6_48h-sc-2115094
common name
house mouse
sample description
DNA from cells
sample name
Stat6_48h-sc-2115094

Sequenced DNA Library

library_name
11795617
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18304215
Reads aligned (%)
98.2
Duplicates removed (%)
12.3
Number of peaks
346 (qval < 1E-05)

mm9

Number of total reads
18304215
Reads aligned (%)
98.0
Duplicates removed (%)
12.4
Number of peaks
363 (qval < 1E-05)

Base call quality data from DBCLS SRA