Antigen

Antigen Class

TFs and others

Antigen

GFP

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

ArrayExpress-Age

14 weeks

ArrayExpress-CellType

Liver

ArrayExpress-DevelopmentalStage

Adult

ArrayExpress-Genotype

MeCP2 GFP tagged

ArrayExpress-Immunoprecipitate

Chromotek GFP trap Agarose

ArrayExpress-OrganismPart

Genomic

ArrayExpress-Phenotype

wildtype

ArrayExpress-Sex

male

ArrayExpress-Species

Mus musculus

ENA first public

2014-11-26

ENA last update

2018-03-08

ENA-CHECKLIST

ERC000011

External Id

SAMEA2634553

INSDC center alias

SC

INSDC center name

Wellcome Sanger Institute

INSDC first public

2014-11-26T10:46:54Z

INSDC last update

2018-03-08T20:04:58Z

INSDC status

public

Submitter Id

m_ChIP_Liver-sc-2015230

common name

house mouse

sample description

ChIP DNA from LIVER (MeCP2 GFP from 15 BL 6 male)

sample name

m_ChIP_Liver-sc-2015230

strain

Bl6 MeCP2 GFP

Sequenced DNA Library

library_name

10846150

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

qPCR only

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

20759738

Reads aligned (%)

89.3

Duplicates removed (%)

33.3

Number of peaks

186 (qval < 1E-05)

mm9

Number of total reads

20759738

Reads aligned (%)

89.0

Duplicates removed (%)

33.6

Number of peaks

155 (qval < 1E-05)