ERX646141
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Neural
Cell type
Glia
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Age
12 weeks
ArrayExpress-CellType
Glia
ArrayExpress-DevelopmentalStage
Adult
ArrayExpress-Genotype
MeCP2 GFP tagged
ArrayExpress-Immunoprecipitate
Chromotek GFP trap Agarose
ArrayExpress-OrganismPart
Brain
ArrayExpress-Phenotype
wildtype
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2014-11-26
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2634551
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-26T10:46:54Z
INSDC last update
2018-03-08T18:53:27Z
INSDC status
public
Submitter Id
m_ChIP_GFP_low_G1-sc-2015228
common name
house mouse
sample description
ChIP DNA from GFP low glia (MeCP2 GFP from 15 BL 6 male)
sample name
m_ChIP_GFP_low_G1-sc-2015228
strain
Bl6 MeCP2 GFP

Sequenced DNA Library

library_name
10846148
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21399009
Reads aligned (%)
87.5
Duplicates removed (%)
43.9
Number of peaks
106 (qval < 1E-05)

mm9

Number of total reads
21399009
Reads aligned (%)
87.2
Duplicates removed (%)
44.4
Number of peaks
79 (qval < 1E-05)

Base call quality data from DBCLS SRA