ERX634424
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
ES cells
ArrayExpress-Genotype
Sall4 KO
ArrayExpress-Species
Mus musculus
ENA first public
2014-11-26
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2661888
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-26T10:46:51Z
INSDC last update
2018-03-08T19:00:33Z
INSDC status
public
Submitter Id
BS_TQ_150714_5-sc-2031420
common name
house mouse
sample description
bisulfite treated genomic DNA from mouse ES cells
sample name
BS_TQ_150714_5-sc-2031420

Sequenced DNA Library

library_name
10996587
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
53737781
Reads aligned (%)
3.0
Duplicates removed (%)
9.6
Number of peaks
384 (qval < 1E-05)

mm9

Number of total reads
53737781
Reads aligned (%)
2.8
Duplicates removed (%)
7.2
Number of peaks
356 (qval < 1E-05)

Base call quality data from DBCLS SRA