ERX631820
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Brd4

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
E14 ESC
ArrayExpress-DevelopmentalStage
Embryonic Stem cells
ArrayExpress-Genotype
Wildtype
ArrayExpress-Immunoprecipitate
BRD4
ArrayExpress-Sex
female
ArrayExpress-Species
Mus Musculus
ENA first public
2014-11-18
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2665105
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-18T09:33:13Z
INSDC last update
2018-03-08T18:54:09Z
INSDC status
public
Submitter Id
BRD4_2i-sc-2036887
common name
house mouse
sample description
DNA from ES cells
sample name
BRD4_2i-sc-2036887

Sequenced DNA Library

library_name
11111512
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10372025
Reads aligned (%)
94.0
Duplicates removed (%)
14.5
Number of peaks
708 (qval < 1E-05)

mm9

Number of total reads
10372025
Reads aligned (%)
93.8
Duplicates removed (%)
14.7
Number of peaks
696 (qval < 1E-05)

Base call quality data from DBCLS SRA