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Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Dnmt1
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
ERX631809
Illumina HiSeq 2500 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Dnmt1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
E14 ESC
ArrayExpress-DevelopmentalStage
Embryonic Stem cells
ArrayExpress-Genotype
Wildtype
ArrayExpress-Immunoprecipitate
DNMT1
ArrayExpress-Sex
female
ArrayExpress-Species
Mus Musculus
ENA first public
2014-11-18
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2665106
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-18T09:33:13Z
INSDC last update
2018-03-08T19:54:27Z
INSDC status
public
Submitter Id
DNMT1_H300_2i-sc-2036888
common name
house mouse
sample description
DNA from ES cells
sample name
DNMT1_H300_2i-sc-2036888
Sequenced DNA Library
library_name
11111513
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
9150106
Reads aligned (%)
95.0
Duplicates removed (%)
16.8
Number of peaks
483 (qval < 1E-05)
mm9
Number of total reads
9150106
Reads aligned (%)
94.7
Duplicates removed (%)
17.1
Number of peaks
470 (qval < 1E-05)
Base call quality data from
DBCLS SRA