ERX626839
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
CHRF-288-11
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
CHRF-288-11
ArrayExpress-Immunoprecipitate
H3K27ac
ArrayExpress-OrganismPart
Blood
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
male
ArrayExpress-Species
Homo sapiens
ENA first public
2014-11-11
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2396221
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-11T09:58:46Z
INSDC last update
2018-03-08T17:14:57Z
INSDC status
public
Submitter Id
NS169-sc-1876468
common name
human
sample description
H3K27ac
sample name
NS169-sc-1876468

Sequenced DNA Library

library_name
9672243
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9927533
Reads aligned (%)
96.7
Duplicates removed (%)
4.4
Number of peaks
15604 (qval < 1E-05)

hg19

Number of total reads
9927533
Reads aligned (%)
96.3
Duplicates removed (%)
4.7
Number of peaks
15599 (qval < 1E-05)

Base call quality data from DBCLS SRA