ERX626837
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
CHRF-288-11
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
CHRF-288-11
ArrayExpress-Immunoprecipitate
SA1
ArrayExpress-OrganismPart
Blood
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
male
ArrayExpress-Species
Homo sapiens
ENA first public
2014-11-11
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2396219
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-11T09:58:46Z
INSDC last update
2018-03-08T17:14:50Z
INSDC status
public
Submitter Id
NS167-sc-1876466
common name
human
sample description
SA1
sample name
NS167-sc-1876466

Sequenced DNA Library

library_name
9672241
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9808544
Reads aligned (%)
94.6
Duplicates removed (%)
9.2
Number of peaks
18793 (qval < 1E-05)

hg19

Number of total reads
9808544
Reads aligned (%)
93.8
Duplicates removed (%)
10.0
Number of peaks
18800 (qval < 1E-05)

Base call quality data from DBCLS SRA