ERX626805
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

ArrayExpress-CellType
HL60
ArrayExpress-Immunoprecipitate
Rad21
ArrayExpress-OrganismPart
Blood
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2014-11-11
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2396195
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-11T09:58:46Z
INSDC last update
2018-03-08T17:14:42Z
INSDC status
public
Submitter Id
NS45-sc-1768716
common name
human
sample description
Rad21
sample name
NS45-sc-1768716

Sequenced DNA Library

library_name
8636868
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14326224
Reads aligned (%)
89.2
Duplicates removed (%)
1.8
Number of peaks
2898 (qval < 1E-05)

hg19

Number of total reads
14326224
Reads aligned (%)
88.5
Duplicates removed (%)
2.8
Number of peaks
2928 (qval < 1E-05)

Base call quality data from DBCLS SRA