ERX626798
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

ArrayExpress-CellType
U937
ArrayExpress-Immunoprecipitate
H3K27ac
ArrayExpress-OrganismPart
Blood
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
male
ArrayExpress-Species
Homo sapiens
ENA first public
2014-11-11
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2396204
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-11T09:58:46Z
INSDC last update
2018-03-08T17:14:50Z
INSDC status
public
Submitter Id
NS132-sc-1768725
common name
human
sample description
H3K27ac
sample name
NS132-sc-1768725

Sequenced DNA Library

library_name
8636877
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5185805
Reads aligned (%)
98.4
Duplicates removed (%)
15.3
Number of peaks
83 (qval < 1E-05)

hg19

Number of total reads
5185805
Reads aligned (%)
97.3
Duplicates removed (%)
16.7
Number of peaks
122 (qval < 1E-05)

Base call quality data from DBCLS SRA