ERX626787
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

ArrayExpress-CellType
HL60
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-OrganismPart
Blood
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2014-11-11T09:58:46Z
ENA-LAST-UPDATE
2018-03-08T17:14:49Z
External Id
SAMEA2396196
INSDC center name
SC
INSDC first public
2014-11-11T09:58:46Z
INSDC last update
2018-03-08T17:14:49Z
INSDC status
public
Submitter Id
NS10-sc-1768717
common name
human
sample description
CTCF
sample name
NS10-sc-1768717
scientific_name
Homo sapiens

Sequenced DNA Library

library_name
8636869
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20222372
Reads aligned (%)
99.0
Duplicates removed (%)
6.2
Number of peaks
14756 (qval < 1E-05)

hg19

Number of total reads
20222372
Reads aligned (%)
98.1
Duplicates removed (%)
7.4
Number of peaks
15043 (qval < 1E-05)

Base call quality data from DBCLS SRA