ERX626773
Illumina MiSeq paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

ArrayExpress-CellType
K562
ArrayExpress-OrganismPart
Blood
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2014-11-11
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2396177
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-11T09:58:46Z
INSDC last update
2018-03-08T17:14:42Z
INSDC status
public
Submitter Id
SBW172-sc-1640101
common name
human
sample description
Rad21-ChIPseq
sample name
SBW172-sc-1640101

Sequenced DNA Library

library_name
7564783
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9770312
Reads aligned (%)
98.8
Duplicates removed (%)
1.1
Number of peaks
7611 (qval < 1E-05)

hg19

Number of total reads
9770312
Reads aligned (%)
98.3
Duplicates removed (%)
1.1
Number of peaks
7592 (qval < 1E-05)

Base call quality data from DBCLS SRA