ERX616934
Illumina Genome Analyzer II sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2014-10-21
ENA last update
2018-03-08
External Id
SAMEA1937129
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-10-21T14:36:54Z
INSDC last update
2018-03-08T15:25:42Z
INSDC status
public
Submitter Id
BG96-sc-2011-04-05T11:05:38Z-1021162
common name
house mouse
sample name
BG96-sc-2011-04-05T11:05:38Z-1021162

Sequenced DNA Library

library_name
1562113
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21240224
Reads aligned (%)
49.4
Duplicates removed (%)
10.2
Number of peaks
6980 (qval < 1E-05)

mm9

Number of total reads
21240224
Reads aligned (%)
49.3
Duplicates removed (%)
10.4
Number of peaks
6930 (qval < 1E-05)

Base call quality data from DBCLS SRA