ERX616918
Illumina Genome Analyzer II sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

External Id
SAMEA2035558
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-10-21T14:36:54Z
INSDC last update
2018-03-08T16:05:33Z
INSDC status
public
Submitter Id
BG80-sc-2010-03-08-31097
common name
house mouse
sample name
BG80-sc-2010-03-08-31097

Sequenced DNA Library

library_name
128086
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20714325
Reads aligned (%)
94.5
Duplicates removed (%)
9.1
Number of peaks
4295 (qval < 1E-05)

mm9

Number of total reads
20714325
Reads aligned (%)
94.3
Duplicates removed (%)
9.2
Number of peaks
4044 (qval < 1E-05)

Base call quality data from DBCLS SRA