ERX613795
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Mus Musculus
ENA first public
2014-10-15
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2627550
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-10-15T14:31:39Z
INSDC last update
2018-03-08T19:45:03Z
INSDC status
public
Submitter Id
FOX6-sc-1983899
common name
house mouse
sample description
mESC
sample name
FOX6-sc-1983899

Sequenced DNA Library

library_name
10713958
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25167940
Reads aligned (%)
97.7
Duplicates removed (%)
11.8
Number of peaks
476 (qval < 1E-05)

mm9

Number of total reads
25167940
Reads aligned (%)
97.5
Duplicates removed (%)
11.9
Number of peaks
490 (qval < 1E-05)

Base call quality data from DBCLS SRA