Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Spleen
ATCC
MeSH
RIKEN BRC
ERX604605
Illumina HiSeq 2500 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.
Attributes by original data submitter
Sample
ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Spleen
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2014-10-06
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2547707
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-10-06T11:26:03Z
INSDC last update
2018-03-08T17:53:54Z
INSDC status
public
Submitter Id
Input_48h-sc-1963237
common name
house mouse
sample description
DNA from cells
sample name
Input_48h-sc-1963237
Sequenced DNA Library
library_name
10653247
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
21923660
Reads aligned (%)
98.6
Duplicates removed (%)
13.7
Number of peaks
459 (qval < 1E-05)
mm9
Number of total reads
21923660
Reads aligned (%)
98.3
Duplicates removed (%)
13.7
Number of peaks
498 (qval < 1E-05)
Base call quality data from
DBCLS SRA