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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: IMR-90
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX552465
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
ENA first public
2015-12-17
ENA last update
2015-12-03
ENA-CHECKLIST
ERC000011
External Id
SAMEA2747198
INSDC center alias
Max Planck Institute of Immunobiology and Epigenetics
INSDC center name
Max Planck Institute of Immunobiology and Epigenetics
INSDC first public
2015-12-17T17:01:16Z
INSDC last update
2015-12-03T16:30:38Z
INSDC status
public
Submitter Id
IMR-90
bio material
ATCC CCL-186
cell line
IMR-90
cell type
fibroblast
common name
human
sample name
IMR-90
sex
female
tissue type
lung
Sequenced DNA Library
library_name
IMR-90_H3K4me3_100k
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra DNA Library Prep kit for Illumina (E7370S, NEB)
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
23234613
Reads aligned (%)
84.9
Duplicates removed (%)
31.2
Number of peaks
21248 (qval < 1E-05)
hg19
Number of total reads
23234613
Reads aligned (%)
84.7
Duplicates removed (%)
31.3
Number of peaks
21137 (qval < 1E-05)
Base call quality data from
DBCLS SRA