ERX552462
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

ENA first public
2015-12-17
ENA last update
2015-12-03
ENA-CHECKLIST
ERC000011
External Id
SAMEA2747198
INSDC center alias
Max Planck Institute of Immunobiology and Epigenetics
INSDC center name
Max Planck Institute of Immunobiology and Epigenetics
INSDC first public
2015-12-17T17:01:16Z
INSDC last update
2015-12-03T16:30:38Z
INSDC status
public
Submitter Id
IMR-90
bio material
ATCC CCL-186
cell line
IMR-90
cell type
fibroblast
common name
human
sample name
IMR-90
sex
female
tissue type
lung

Sequenced DNA Library

library_name
IMR-90_H3K27me3_10k
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra DNA Library Prep kit for Illumina (E7370S, NEB)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48416637
Reads aligned (%)
94.0
Duplicates removed (%)
24.5
Number of peaks
869 (qval < 1E-05)

hg19

Number of total reads
48416637
Reads aligned (%)
93.3
Duplicates removed (%)
25.0
Number of peaks
553 (qval < 1E-05)

Base call quality data from DBCLS SRA