Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Bone Marrow Cells
MeSH Description
Cells contained in the bone marrow including fat cells (see ADIPOCYTES); STROMAL CELLS; MEGAKARYOCYTES; and the immediate precursors of most blood cells.

Attributes by original data submitter

Sample

ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Lin- bone marrow cells
ArrayExpress-Phenotype
wt
ArrayExpress-Sex
male
ArrayExpress-Species
Mus Musculus
ENA first public
2014-08-08
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2417203
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-08-08T10:00:37Z
INSDC last update
2018-03-08T17:16:33Z
INSDC status
public
Submitter Id
NPM1_WT2_H3K27Me3-sc-1884528
common name
house mouse
sample description
Lin- bone marrow cells
sample name
NPM1_WT2_H3K27Me3-sc-1884528

Sequenced DNA Library

library_name
9940639
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
10005085
Reads aligned (%)
98.4
Duplicates removed (%)
5.7
Number of peaks
214 (qval < 1E-05)

mm9

Number of total reads
10005085
Reads aligned (%)
98.2
Duplicates removed (%)
5.9
Number of peaks
186 (qval < 1E-05)

Base call quality data from DBCLS SRA