Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2015-01-29T17:02:59Z
ENA-LAST-UPDATE
2018-03-08T18:38:31Z
External Id
SAMEA2677866
INSDC center name
Cambridge Institute - Cancer Research UK and University of Cambridge
INSDC first public
2015-01-29T17:02:59Z
INSDC last update
2018-03-08T18:38:31Z
INSDC status
public
Submitter Id
E-MTAB-2633_rev:CRI7
broker name
ArrayExpress
common name
human
developmental stage
adult
genotype
wild type
individual
CRI7
organism part
liver
sample name
E-MTAB-2633_rev:CRI7
scientific_name
Homo sapiens
sex
non-identifiable human individual
specimen with known storage state
fresh specimen

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
34809801
Reads aligned (%)
92.6
Duplicates removed (%)
2.8
Number of peaks
14951 (qval < 1E-05)

hg19

Number of total reads
34809801
Reads aligned (%)
91.9
Duplicates removed (%)
3.8
Number of peaks
14957 (qval < 1E-05)

Base call quality data from DBCLS SRA