ERX530238
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Spleen
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ArrayExpress-TimePoint
72h
ArrayExpress-Treatment
Il4
ENA first public
2014-07-28
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2446747
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-07-28T14:21:13Z
INSDC last update
2018-03-08T17:23:51Z
INSDC status
public
Submitter Id
Epas1_72h-sc-1922323
common name
house mouse
sample description
DNA from cells
sample name
Epas1_72h-sc-1922323

Sequenced DNA Library

library_name
9940650
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21875851
Reads aligned (%)
98.1
Duplicates removed (%)
67.2
Number of peaks
431 (qval < 1E-05)

mm9

Number of total reads
21875851
Reads aligned (%)
97.9
Duplicates removed (%)
67.3
Number of peaks
415 (qval < 1E-05)

Base call quality data from DBCLS SRA