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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
ERX497633
Illumina HiSeq 2000 sequencing; ChIP seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2015-06-30T17:01:04Z
ENA-LAST-UPDATE
2018-03-08T18:24:58Z
External Id
SAMEA2594041
INSDC center name
National Research Center for Epigenome Reprogramming Network
INSDC first public
2015-06-30T17:01:04Z
INSDC last update
2018-03-08T18:24:58Z
INSDC status
public
Submitter Id
E-MTAB-2002_AddSamples:cell_culture_1
broker name
ArrayExpress
cell type
mouse embryonic stem cell
common name
house mouse
sample name
E-MTAB-2002_AddSamples:cell_culture_1
scientific_name
Mus musculus
specimen with known storage state
fresh specimen
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
18314202
Reads aligned (%)
97.7
Duplicates removed (%)
15.0
Number of peaks
553 (qval < 1E-05)
mm9
Number of total reads
18314202
Reads aligned (%)
97.4
Duplicates removed (%)
15.0
Number of peaks
582 (qval < 1E-05)
Base call quality data from
DBCLS SRA