ERX3909220
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-SEX
female
ArrayExpress-SPECIES
Mus musculus
ENA first public
2018-11-06
ENA last update
2017-10-23
ENA-CHECKLIST
ERC000011
External Id
SAMEA104357202
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-11-06T17:03:27Z
INSDC last update
2017-10-23T12:15:29Z
INSDC status
public
Submitter Id
d9146106-b4c6-11e7-bc98-68b599768938
common name
house mouse
gender
female
sample name
d9146106-b4c6-11e7-bc98-68b599768938
subject id
1992STDY7155669

Sequenced DNA Library

library_name
NT1196631T
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9917728
Reads aligned (%)
76.2
Duplicates removed (%)
15.6
Number of peaks
385 (qval < 1E-05)

mm9

Number of total reads
9917728
Reads aligned (%)
76.1
Duplicates removed (%)
15.9
Number of peaks
352 (qval < 1E-05)

Base call quality data from DBCLS SRA