ERX378292
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
H9 hESC line
ArrayExpress-Compound
Dpy30 shRNA
ArrayExpress-Genotype
Dpy30 shRNA
ArrayExpress-Immunoprecipitate
Anti H3K4me3
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2013-11-18
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA1929687
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-11-18T09:24:39Z
INSDC last update
2018-03-08T16:37:41Z
INSDC status
public
Submitter Id
Dpy30_KD_H3K4me3_replicate2-sc-2013-07-25T11:46:43Z-1672031
common name
human
sample description
ChIP for H3K4me3 from H9 cells expressing an shRNA against Dpy30
sample name
Dpy30_KD_H3K4me3_replicate2-sc-2013-07-25T11:46:43Z-1672031

Sequenced DNA Library

library_name
7997221
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5037996
Reads aligned (%)
97.7
Duplicates removed (%)
1.1
Number of peaks
19126 (qval < 1E-05)

hg19

Number of total reads
5037996
Reads aligned (%)
97.6
Duplicates removed (%)
1.1
Number of peaks
19054 (qval < 1E-05)

Base call quality data from DBCLS SRA