ERX378114
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
H9 hESC line
ArrayExpress-Compound
Activin
ArrayExpress-Dose
10 ng/ml
ArrayExpress-Genotype
Wildtype
ArrayExpress-GrowthCondition
Activin
ArrayExpress-Immunoprecipitate
Anti H3K4me3
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ArrayExpress-TimePoint
4h
ENA first public
2013-11-18
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA1929669
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-11-18T09:24:39Z
INSDC last update
2018-03-08T16:37:19Z
INSDC status
public
Submitter Id
Activin_H3K4me3_replicate2-sc-2013-07-25T11:46:22Z-1672013
common name
human
sample description
ChIP for H3K4me3 from H9 cells treated with 10ng/ml Activin
sample name
Activin_H3K4me3_replicate2-sc-2013-07-25T11:46:22Z-1672013

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4588782
Reads aligned (%)
98.5
Duplicates removed (%)
0.8
Number of peaks
21196 (qval < 1E-05)

hg19

Number of total reads
4588782
Reads aligned (%)
98.3
Duplicates removed (%)
0.8
Number of peaks
21113 (qval < 1E-05)

Base call quality data from DBCLS SRA