ERX378070
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
H9 hESC line
ArrayExpress-Compound
SB431542
ArrayExpress-Dose
10 uM
ArrayExpress-Genotype
Wildtype
ArrayExpress-GrowthCondition
SB431542
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2013-11-18
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA1929705
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-11-18T09:24:39Z
INSDC last update
2018-03-08T16:37:42Z
INSDC status
public
Submitter Id
SB_Input-sc-2013-07-25T11:47:01Z-1672049
common name
human
sample description
Pooled input DNA for ChIPs in H9 treated with SB431542
sample name
SB_Input-sc-2013-07-25T11:47:01Z-1672049

Sequenced DNA Library

library_name
7997239
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4652042
Reads aligned (%)
98.7
Duplicates removed (%)
0.8
Number of peaks
137 (qval < 1E-05)

hg19

Number of total reads
4652042
Reads aligned (%)
97.7
Duplicates removed (%)
0.8
Number of peaks
122 (qval < 1E-05)

Base call quality data from DBCLS SRA