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For hg38
BigWig
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For hg19
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: BCL11A
wikigenes
PDBj
CellType: Mammary epithelial cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX371712
Illumina HiSeq 2000 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
BCL11A
Cell type
Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
Mammary Epithelial
ArrayExpress-Genotype
Wildtype
ArrayExpress-GrowthCondition
As described on ATCC
ArrayExpress-Immunoprecipitate
BCL11A
ArrayExpress-OrganismPart
Mammary gland
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2014-01-07
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2190004
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-01-07T10:46:39Z
INSDC last update
2018-03-08T16:45:29Z
INSDC status
public
Submitter Id
WKSE_3a-sc-2013-09-23T13:09:46Z-1705805
common name
human
sample description
MCF10A cells BCL11A pulldown
sample name
WKSE_3a-sc-2013-09-23T13:09:46Z-1705805
Sequenced DNA Library
library_name
8215915
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
8548443
Reads aligned (%)
80.0
Duplicates removed (%)
76.0
Number of peaks
366 (qval < 1E-05)
hg19
Number of total reads
8548443
Reads aligned (%)
78.1
Duplicates removed (%)
81.5
Number of peaks
329 (qval < 1E-05)
Base call quality data from
DBCLS SRA