ERX371690
Illumina HiSeq 2000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Mammary Epithelial
ArrayExpress-Genotype
Wildtype
ArrayExpress-GrowthCondition
As described on ATCC
ArrayExpress-Immunoprecipitate
BRD4
ArrayExpress-OrganismPart
Mammary gland
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2014-01-07T10:46:39Z
ENA-LAST-UPDATE
2018-03-08T16:45:20Z
External Id
SAMEA2189998
INSDC center name
SC
INSDC first public
2014-01-07T10:46:39Z
INSDC last update
2018-03-08T16:45:20Z
INSDC status
public
Submitter Id
WKSE_1b-sc-2013-09-23T13:09:05Z-1705798
common name
human
sample description
MDA231 cells BRD4 pulldown
sample name
WKSE_1b-sc-2013-09-23T13:09:05Z-1705798
scientific_name
Homo sapiens

Sequenced DNA Library

library_name
8215908
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8070632
Reads aligned (%)
99.7
Duplicates removed (%)
25.4
Number of peaks
194 (qval < 1E-05)

hg19

Number of total reads
8070632
Reads aligned (%)
99.2
Duplicates removed (%)
31.7
Number of peaks
120 (qval < 1E-05)

Base call quality data from DBCLS SRA