ERX3608304
NextSeq 500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2019-10-24
ENA last update
2019-10-23
ENA-CHECKLIST
ERC000011
External Id
SAMEA6109768
INSDC center alias
Heinrich-Pette-Institute, Leibniz-Institute for experimental Virology
INSDC center name
Heinrich-Pette-Institute, Leibniz-Institute for experimental Virology
INSDC first public
2019-10-24T04:04:52Z
INSDC last update
2019-10-23T19:06:14Z
INSDC status
public
Submitter Id
TG_chip_0080
common name
house mouse
sample name
TG_chip_0080

Sequenced DNA Library

library_name
mle12mlana_bac16d73_33dpi_h3k4me3_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24830365
Reads aligned (%)
91.5
Duplicates removed (%)
16.1
Number of peaks
18037 (qval < 1E-05)

mm9

Number of total reads
24830365
Reads aligned (%)
91.3
Duplicates removed (%)
16.1
Number of peaks
18057 (qval < 1E-05)

Base call quality data from DBCLS SRA