ERX3608269
NextSeq 500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2019-10-24
ENA last update
2019-10-23
ENA-CHECKLIST
ERC000011
External Id
SAMEA6109760
INSDC center alias
Heinrich-Pette-Institute, Leibniz-Institute for experimental Virology
INSDC center name
Heinrich-Pette-Institute, Leibniz-Institute for experimental Virology
INSDC first public
2019-10-24T04:04:52Z
INSDC last update
2019-10-23T19:05:30Z
INSDC status
public
Submitter Id
TG_chip_0072
common name
human
sample name
TG_chip_0072

Sequenced DNA Library

library_name
slk_kshv_24hpi_input_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22767840
Reads aligned (%)
98.2
Duplicates removed (%)
7.4
Number of peaks
732 (qval < 1E-05)

hg19

Number of total reads
22767840
Reads aligned (%)
97.5
Duplicates removed (%)
8.6
Number of peaks
784 (qval < 1E-05)

Base call quality data from DBCLS SRA