Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: NA
ATCC
MeSH
RIKEN BRC
ERX3524468
NextSeq 500 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
No description
Cell type
NA
NA
NA
Attributes by original data submitter
Sample
ENA first public
2019-09-01
ENA last update
2019-09-01
ENA-CHECKLIST
ERC000011
External Id
SAMEA5927698
INSDC center alias
NYU School of Medicine - Applied Bioinformatics Laboratories
INSDC center name
NYU School of Medicine - Applied Bioinformatics Laboratories
INSDC first public
2019-09-01T17:04:19Z
INSDC last update
2019-09-01T16:32:32Z
INSDC status
public
Submitter Id
BMDM_APO_IN3-2
common name
house mouse
sample name
BMDM_APO_IN3-2
Sequenced DNA Library
library_name
BMDM_APO_IN3
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
46305283
Reads aligned (%)
98.6
Duplicates removed (%)
11.0
Number of peaks
343 (qval < 1E-05)
mm9
Number of total reads
46305283
Reads aligned (%)
98.5
Duplicates removed (%)
11.0
Number of peaks
359 (qval < 1E-05)
Base call quality data from
DBCLS SRA