Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2019-09-01
ENA last update
2019-09-01
ENA-CHECKLIST
ERC000011
External Id
SAMEA5927687
INSDC center alias
NYU School of Medicine - Applied Bioinformatics Laboratories
INSDC center name
NYU School of Medicine - Applied Bioinformatics Laboratories
INSDC first public
2019-09-01T17:04:19Z
INSDC last update
2019-09-01T16:32:32Z
INSDC status
public
Submitter Id
BMDM_APO1-1
common name
house mouse
sample name
BMDM_APO1-1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
11838805
Reads aligned (%)
93.3
Duplicates removed (%)
5.4
Number of peaks
182 (qval < 1E-05)

mm9

Number of total reads
11838805
Reads aligned (%)
93.1
Duplicates removed (%)
5.5
Number of peaks
200 (qval < 1E-05)

Base call quality data from DBCLS SRA