ERX3524450
NextSeq 500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2019-09-01
ENA last update
2019-09-01
ENA-CHECKLIST
ERC000011
External Id
SAMEA5927680
INSDC center alias
NYU School of Medicine - Applied Bioinformatics Laboratories
INSDC center name
NYU School of Medicine - Applied Bioinformatics Laboratories
INSDC first public
2019-09-01T17:04:19Z
INSDC last update
2019-09-01T16:32:31Z
INSDC status
public
Submitter Id
BMDM3-2
common name
house mouse
sample name
BMDM3-2

Sequenced DNA Library

library_name
BMDM3
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
74859780
Reads aligned (%)
98.5
Duplicates removed (%)
18.3
Number of peaks
504 (qval < 1E-05)

mm9

Number of total reads
74859780
Reads aligned (%)
98.3
Duplicates removed (%)
18.3
Number of peaks
511 (qval < 1E-05)

Base call quality data from DBCLS SRA