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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: CAL-51
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX348276
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Breast
Cell type
CAL-51
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2014-05-01
ENA-LAST-UPDATE
2013-10-30
External Id
SAMEA2242693
INSDC center alias
MPIMG
INSDC center name
Max Planck Institute for Molecular Genetics
INSDC first public
2014-05-01T17:00:43Z
INSDC last update
2013-10-30T15:49:10Z
INSDC status
public
Submitter Id
5_CAL51_WT_R_1h_ChIP_TP53
cell_line
CAL51
common name
human
sample name
5_CAL51_WT_R_1h_ChIP_TP53
Sequenced DNA Library
library_name
lib_363
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP sample preparation protocol with pe adapters
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
17135212
Reads aligned (%)
99.1
Duplicates removed (%)
3.7
Number of peaks
695 (qval < 1E-05)
hg19
Number of total reads
17135212
Reads aligned (%)
99.0
Duplicates removed (%)
4.4
Number of peaks
877 (qval < 1E-05)
Base call quality data from
DBCLS SRA