ERX3447959
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-PHENOTYPE
wildtype
ArrayExpress-SPECIES
Mus musculus
ENA first public
2019-07-09
ENA last update
2018-06-25
ENA-CHECKLIST
ERC000011
External Id
SAMEA4758663
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2019-07-09T17:06:18Z
INSDC last update
2018-06-25T14:44:35Z
INSDC status
public
Submitter Id
a1ec1de4-760f-11e8-b956-68b599768938
common name
house mouse
phenotype
wildtype
sample name
a1ec1de4-760f-11e8-b956-68b599768938
subject id
Th2_ATAC7548062

Sequenced DNA Library

library_name
NT1433205E
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index pre quality controlled

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13044112
Reads aligned (%)
82.5
Duplicates removed (%)
84.6
Number of peaks
32 (qval < 1E-05)

mm9

Number of total reads
13044112
Reads aligned (%)
82.4
Duplicates removed (%)
84.7
Number of peaks
38 (qval < 1E-05)

Base call quality data from DBCLS SRA