ERX339058
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Liver
ArrayExpress-DevelopmentalStage
Adult
ArrayExpress-Genotype
MeCP2 GFP tagged
ArrayExpress-Immunoprecipitate
Chromotek GFP trap Agarose
ArrayExpress-OrganismPart
Brain
ArrayExpress-Phenotype
wildtype
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2013-11-11
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2161368
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-11-11T10:30:47Z
INSDC last update
2018-03-08T16:37:20Z
INSDC status
public
Submitter Id
m_ChIP_Control_Liver-sc-2013-07-18T13:26:54Z-1669286
common name
house mouse
sample description
ChIP DNA from Liver control (MeCP2 GFP from 15 BL 6 male)
sample name
m_ChIP_Control_Liver-sc-2013-07-18T13:26:54Z-1669286
strain
Bl6 MeCP2 GFP

Sequenced DNA Library

library_name
7834279
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
8335387
Reads aligned (%)
93.2
Duplicates removed (%)
66.9
Number of peaks
79 (qval < 1E-05)

mm9

Number of total reads
8335387
Reads aligned (%)
93.0
Duplicates removed (%)
67.6
Number of peaks
55 (qval < 1E-05)

Base call quality data from DBCLS SRA