ERX339057
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Neural
Cell type
Glia
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Glia
ArrayExpress-DevelopmentalStage
Adult
ArrayExpress-Genotype
MeCP2 GFP tagged
ArrayExpress-Immunoprecipitate
Chromotek GFP trap Agarose
ArrayExpress-OrganismPart
Brain
ArrayExpress-Phenotype
wildtype
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2013-11-11
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2147990
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-11-11T10:30:47Z
INSDC last update
2018-03-08T16:37:21Z
INSDC status
public
Submitter Id
m_ChIP_GFP_low_G3-sc-2013-07-18T13:26:53Z-1669285
common name
house mouse
sample description
ChIP DNA from GFP low glia (MeCP2 GFP from 15 BL 6 male)
sample name
m_ChIP_GFP_low_G3-sc-2013-07-18T13:26:53Z-1669285
strain
Bl6 MeCP2 GFP

Sequenced DNA Library

library_name
7834278
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6024515
Reads aligned (%)
83.1
Duplicates removed (%)
50.3
Number of peaks
79 (qval < 1E-05)

mm9

Number of total reads
6024515
Reads aligned (%)
82.9
Duplicates removed (%)
51.2
Number of peaks
56 (qval < 1E-05)

Base call quality data from DBCLS SRA