Antigen

Antigen Class

TFs and others

Antigen

GFP

Cell type

Cell type Class

Neural

Cell type

Neurons

MeSH Description

The basic cellular units of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the NERVOUS SYSTEM.

Sample

ArrayExpress-CellType

Neurons

ArrayExpress-DevelopmentalStage

Adult

ArrayExpress-Genotype

MeCP2 GFP tagged

ArrayExpress-Immunoprecipitate

Chromotek GFP trap Agarose

ArrayExpress-OrganismPart

Brain

ArrayExpress-Phenotype

wildtype

ArrayExpress-Sex

male

ArrayExpress-Species

Mus musculus

ENA first public

2013-11-11

ENA last update

2018-03-08

ENA-CHECKLIST

ERC000011

External Id

SAMEA2145447

INSDC center alias

SC

INSDC center name

Wellcome Sanger Institute

INSDC first public

2013-11-11T10:30:47Z

INSDC last update

2018-03-08T16:37:20Z

INSDC status

public

Submitter Id

m_ChIP_GFP_high_N1-sc-2013-07-18T13:26:48Z-1669280

common name

house mouse

sample description

ChIP DNA from GFP high neurons (MeCP2 GFP from 15 BL 6 male)

sample name

m_ChIP_GFP_high_N1-sc-2013-07-18T13:26:48Z-1669280

strain

Bl6 MeCP2 GFP

Sequenced DNA Library

library_name

7834273

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

qPCR only

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

9741924

Reads aligned (%)

92.8

Duplicates removed (%)

71.7

Number of peaks

74 (qval < 1E-05)

mm9

Number of total reads

9741924

Reads aligned (%)

92.6

Duplicates removed (%)

73.0

Number of peaks

48 (qval < 1E-05)