ERX3329172
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-SPECIES
Mus musculus
ENA first public
2019-05-02
ENA last update
2018-04-10
ENA-CHECKLIST
ERC000011
External Id
SAMEA1093791
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2019-05-02T04:04:07Z
INSDC last update
2018-04-10T13:35:29Z
INSDC status
public
Submitter Id
1d9e2cd4-37e5-11e8-ab6a-68b59976a384
common name
house mouse
sample name
1d9e2cd4-37e5-11e8-ab6a-68b59976a384
subject id
1992STDY7423697

Sequenced DNA Library

library_name
NT1363108N
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Custom

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12332829
Reads aligned (%)
77.0
Duplicates removed (%)
43.0
Number of peaks
4781 (qval < 1E-05)

mm9

Number of total reads
12332829
Reads aligned (%)
77.0
Duplicates removed (%)
43.1
Number of peaks
4732 (qval < 1E-05)

Base call quality data from DBCLS SRA