Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2014-01-05
ENA-LAST-UPDATE
2013-10-24
External Id
SAMEA2242010
INSDC center alias
BCO
INSDC center name
University of Oulu
INSDC first public
2014-01-05T17:02:23Z
INSDC last update
2013-10-24T09:57:44Z
INSDC status
public
Submitter Id
VCaP ChIP-seq1
common name
human
sample name
VCaP ChIP-seq1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
27547560
Reads aligned (%)
99.2
Duplicates removed (%)
1.7
Number of peaks
932 (qval < 1E-05)

hg19

Number of total reads
27547560
Reads aligned (%)
98.3
Duplicates removed (%)
3.4
Number of peaks
1031 (qval < 1E-05)

Base call quality data from DBCLS SRA