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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: NA
ATCC
MeSH
RIKEN BRC
ERX3303288
NextSeq 500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
No description
Cell type
NA
NA
NA
Attributes by original data submitter
Sample
ENA first public
2019-05-13
ENA last update
2019-04-10
ENA-CHECKLIST
ERC000011
External Id
SAMEA5563030
INSDC center alias
UNIVERSITY OF ZURICH
INSDC center name
UNIVERSITY OF ZURICH
INSDC first public
2019-05-13T17:05:03Z
INSDC last update
2019-04-10T14:51:15Z
INSDC status
public
Submitter Id
GM-CSF_1_B
common name
house mouse
sample name
GM-CSF_1_B
Sequenced DNA Library
library_name
in vitro differentiated
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
ATAC (Buenrostro)
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
29254434
Reads aligned (%)
75.8
Duplicates removed (%)
13.8
Number of peaks
13490 (qval < 1E-05)
mm9
Number of total reads
29254434
Reads aligned (%)
75.7
Duplicates removed (%)
13.8
Number of peaks
13480 (qval < 1E-05)
Base call quality data from
DBCLS SRA