ERX3303288
NextSeq 500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2019-05-13
ENA last update
2019-04-10
ENA-CHECKLIST
ERC000011
External Id
SAMEA5563030
INSDC center alias
UNIVERSITY OF ZURICH
INSDC center name
UNIVERSITY OF ZURICH
INSDC first public
2019-05-13T17:05:03Z
INSDC last update
2019-04-10T14:51:15Z
INSDC status
public
Submitter Id
GM-CSF_1_B
common name
house mouse
sample name
GM-CSF_1_B

Sequenced DNA Library

library_name
in vitro differentiated
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
ATAC (Buenrostro)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29254434
Reads aligned (%)
75.8
Duplicates removed (%)
13.8
Number of peaks
13490 (qval < 1E-05)

mm9

Number of total reads
29254434
Reads aligned (%)
75.7
Duplicates removed (%)
13.8
Number of peaks
13480 (qval < 1E-05)

Base call quality data from DBCLS SRA