ERX330089
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Glia
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Glia
ArrayExpress-DevelopmentalStage
Adult
ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Brain
ArrayExpress-Phenotype
wildtype
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2013-10-21
ENA last update
2018-03-08
External Id
SAMEA2059817
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-10-21T10:22:56Z
INSDC last update
2018-03-08T16:20:53Z
INSDC status
public
Submitter Id
m_5hmC_Glia_2-sc-2013-03-19T13:56:18Z-1599123
common name
house mouse
sample description
gDNA from FACS sorted glia
sample name
m_5hmC_Glia_2-sc-2013-03-19T13:56:18Z-1599123
strain
Bl6

Sequenced DNA Library

library_name
7017613
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
96454680
Reads aligned (%)
3.3
Duplicates removed (%)
6.7
Number of peaks
1267 (qval < 1E-05)

mm9

Number of total reads
96454680
Reads aligned (%)
3.3
Duplicates removed (%)
7.0
Number of peaks
1251 (qval < 1E-05)

Base call quality data from DBCLS SRA